PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G163800.1.p
Common NameSb01g014310, SORBIDRAFT_01g014310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 342aa    MW: 37257.4 Da    PI: 8.2827
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G163800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.3e-5651301128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++kv++  + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkd
  Sobic.001G163800.1.p   5 LPPGFRFHPTDEELVTYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKD 92 
                           79*************************999.89***************999999*********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ke+++  g lvg+kktLvfy+grapkg+kt+Wvmheyrl
  Sobic.001G163800.1.p  93 KEIFH-CGMLVGMKKTLVFYRGRAPKGQKTSWVMHEYRL 130
                           *****.99*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-643151IPR003441NAC domain
PROSITE profilePS5100560.2155151IPR003441NAC domain
PfamPF023652.7E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEEGLPPGFR FHPTDEELVT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PSKASMGEKE  60
WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGQK  120
TSWVMHEYRL QNKFPYKPNK EEWVVCRVFK KCQVIKMRPP QDSPTMGSPC HDAGNASLGE  180
LGELDVSSIL GGLAAAAAHT SSGSPPGVLH HQGSAAAAES FVGAHNRPVD MSAYMSWMAA  240
ANQGAAAAAA MLPWATTTPP GLFGNVFAPN NHQLLQKPLP FAGGCSGQPR GLGGVVANNV  300
VVGSGEHAMF GSSVVKVGME CDQQQQPEQQ LGMDESTWRT F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B9e-57515117165NAC domain-containing protein 19
4dul_A9e-57515117165NAC domain-containing protein 19
1ut7_B9e-57515117165NO APICAL MERISTEM PROTEIN
1ut7_A9e-57515117165NO APICAL MERISTEM PROTEIN
1ut4_B9e-57515117165NO APICAL MERISTEM PROTEIN
1ut4_A9e-57515117165NO APICAL MERISTEM PROTEIN
3swp_D1e-56515120168NAC domain-containing protein 19
3swp_C1e-56515120168NAC domain-containing protein 19
3swp_B1e-56515120168NAC domain-containing protein 19
3swp_A1e-56515120168NAC domain-containing protein 19
3swm_D1e-56515120168NAC domain-containing protein 19
3swm_C1e-56515120168NAC domain-containing protein 19
3swm_B1e-56515120168NAC domain-containing protein 19
3swm_A1e-56515120168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631710.0AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466794.10.0hypothetical protein SORBIDRAFT_01g014310
TrEMBLC5WS740.0C5WS74_SORBI; Putative uncharacterized protein Sb01g014310
STRINGSb01g014310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79193450
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.16e-94NAC domain containing protein 58